miniasm
Ultrafast de novo assembly for long noisy reads (Galaxy Version 0.3_r179+galaxy1)Tool Parameters
Please provide a value for this option.
*
No datasets with fastq, fastq.gz, fasta or fasta.gz elements available
Parameter 'paf': specify a dataset of the required format / build for parameter
*
No datasets with paf elements available
Additional Options
Send an email notification when the job completes.
Help
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
NOTE: This tool may take a long time depending on the size and characteristics of your dataset.
Unnamed history
Draggable