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Diamond view

generate formatted output from DAA files (Galaxy Version 2.1.11+galaxy0)

Tool Parameters

Please provide a value for this option.

input file in DAA format * required

No datasets with daa elements available

(--daa)

Output options

Method to restrict the number of hits?

The maximum number of target sequences per query to report alignments for *

Setting this to 0 will report all alignments that were found. (--max-target-seqs)

only show alignments of forward strand

(--forwardonly)

Additional Options

Email notification

Send an email notification when the job completes.

Help

What it does

Converts diamond daa files to multiple other formats.

Input

Input data is a daa file.

Output

Alignment results in BLAST format (pairwise/tabular), xml, sam, taxonomic (Note the latter does not work with the current diamond version. )

BLAST tables contain the following columns.

Column Description 1 Query Seq-id (ID of your sequence) 2 Subject Seq-id (ID of the database hit) 3 Percentage of identical matches 4 Alignment length 5 Number of mismatches 6 Number of gap openings 7 Start of alignment in query 8 End of alignment in query 9 Start of alignment in subject (database hit) 10 End of alignment in subject (database hit) 11 Expectation value (E-value) 12 Bit score

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