Mutation analysis (imported from uploaded file)


StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Fastq
Step 3: Input dataset
select at runtime
Fastq
Step 4: Map with BWA-MEM
Use a genome from history and build index
Output dataset 'output' from step 1
Auto. Let BWA decide the best algorithm to use
Paired
Output dataset 'output' from step 2
Output dataset 'output' from step 3
Empty.
Set read groups (SAM/BAM specification)
False
Reads
False
Reads
ILLUMINA
False
Reads
Empty.
Empty.
Empty.
Empty.
Empty.
Empty.
Not available.
Empty.
1.Simple Illumina mode
Use default job resource parameters
Step 5: Unknown Tool with id 'gatk3'
Step 6: Unknown Tool with id 'gatk3'
Step 7: Unknown Tool with id 'gatk3'
Step 8: Unknown Tool with id 'gatk3'