Map Illumina Indiv. to candidate transcripts and count


StepAnnotation
Step 1: Map with Bowtie for Illumina
Use one from the history
select at runtime
Default
Single-end
select at runtime
Full parameter list
0
-1
0
0
Maq-like: quality-aware, limit mismatches in seed (-n)
2
70
28
Round to nearest 10
Align against the forward reference strand
Align against the reverse-complement reference strand
Use best
Do not use strata option
Do not try hard
800
Do not report all valid alignments
1
-1
False
False
-1
-1
False

No value found for 'Save the bowtie mapping statistics to the history'. Using default: 'False'.

False
Use default job resource parameters
Step 2: SAM-to-BAM
Use a genome from the history
Output dataset 'output' from step 1
select at runtime
Use default job resource parameters
Step 3: Unknown Tool with id 'picard_BamIndexStats'
Step 4: Unknown Tool with id 'PicardASMetrics'