Step | Annotation |
---|---|
Step 1: Map with Bowtie for Illumina
Use one from the history
select at runtime
Default
Single-end
select at runtime
Full parameter list
0
-1
0
0
Maq-like: quality-aware, limit mismatches in seed (-n)
2
70
28
Round to nearest 10
Align against the forward reference strand
Align against the reverse-complement reference strand
Use best
Do not use strata option
Do not try hard
800
Do not report all valid alignments
1
-1
False
False
-1
-1
False
False
Use default job resource parameters
|
|
Step 2: SAM-to-BAM
Use a genome from the history
Output dataset 'output' from step 1
select at runtime
Use default job resource parameters
|
|
Step 3: Unknown Tool with id 'picard_BamIndexStats'
|
|
Step 4: Unknown Tool with id 'PicardASMetrics'
|
ts-ecogen
All published workflows
Published workflows by ts-ecogen