BA

Annotation:

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Download and Extract Reads in FASTA/Q
List of SRA accession, one per line
Output dataset 'output' from step 1
Not available.
Advanced Options:
Not available.
Not available.
Not available.
True
both
Empty.
Empty.
None
Empty.
False
False
Empty.
Step 3: MEGAHIT
Single
Output dataset 'output_collection' from step 2
Basic assembly options:
2
Specify list
21,29,39,59,79,99,119,141
Advanced assembly options:
False
2
20,0.95
2
2
0.2
False
False
Output options:
200
False
Use default job resource parameters
Step 4: ABRicate
Output dataset 'output' from step 3
Advanced options:
Resfinder
False
80.0
80.0