Make Ensembl GTF compatible with Cufflinks

Annotation: Converts an Ensembl gene annotation file so that it can be used with Cufflinks/compare/diff.

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Cut
c1
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Output dataset 'output' from step 1
Step 3: Cut
c2,c3,c4,c5,c6,c7,c8,c9
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Output dataset 'output' from step 1
Step 4: Add column
chr
Output dataset 'out_file1' from step 2
NO
Step 5: Merge Columns
Output dataset 'out_file1' from step 4
2
1
Columns
Step 6: Cut
c3
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Output dataset 'out_file1' from step 5
Step 7: Paste
Output dataset 'out_file1' from step 6
Output dataset 'out_file1' from step 3
Tab