Galaxy | Accessible Workflow | Workflow constructed from history 'test cutadapt listpaired'

Workflow constructed from history 'test cutadapt listpaired'

Annotation:

Step	Annotation
Step 1: Input dataset collection "Input Dataset Collection" select at runtime
Step 2: Cutadapt Single-end or Paired-end reads? Paired-end Collection Paired Collection Output dataset 'output' from step 1 Read 1 Options: 3' (End) Adapters 5' (Front) Adapters 5' or 3' (Anywhere) Adapters Cut bases from reads before adapter trimming 1 Read 2 Options: 3' (End) Adapters 5' (Front) Adapters 5' or 3' (Anywhere) Adapters Cut bases from the second read in each pair. 0 Adapter Options: Maximum error rate 0.1 Do not allow indels (Use ONLY with anchored 5' (front) adapters). False Match times 1 Minimum overlap length 3 Match Wildcards In the adapters but not in the reads Do not trim adapters False Mask Adapters False Filter Options: Discard Trimmed Reads False Discard Untrimmed Reads False Minimum length 0 Maximum length 0 Max N Not available. Pair filter any Read Modification Options: Quality cutoff 0 NextSeq trimming 0 Trim Ns False Prefix Empty. Suffix Empty. Strip suffix Empty. Length 0 Length Tag Empty. Output Options: Report False Info File False Rest of Read False Wildcard File False Too Short Reads False Too Long Reads False Untrimmed Reads False Multiple output False Job Resource Parameters Use default job resource parameters

Step

Annotation

Step 1: Input dataset collection

"Input Dataset Collection"

select at runtime

Step 2: Cutadapt

Single-end or Paired-end reads?

Paired-end Collection

Paired Collection

Output dataset 'output' from step 1

Read 1 Options:

3' (End) Adapters

5' (Front) Adapters

5' or 3' (Anywhere) Adapters

Cut bases from reads before adapter trimming

Read 2 Options:

3' (End) Adapters

5' (Front) Adapters

5' or 3' (Anywhere) Adapters

Cut bases from the second read in each pair.

Adapter Options:

Maximum error rate

0.1

Do not allow indels (Use ONLY with anchored 5' (front) adapters).

False

Match times

Minimum overlap length

Match Wildcards

In the adapters but not in the reads

Do not trim adapters

False

Mask Adapters

False

Filter Options:

Discard Trimmed Reads

False

Discard Untrimmed Reads

False

Minimum length

Maximum length

Max N

Not available.

Pair filter

any

Read Modification Options:

Quality cutoff

NextSeq trimming

Trim Ns

False

Prefix

Empty.

Suffix

Empty.

Strip suffix

Empty.

Length

Length Tag

Empty.

Output Options:

Report

False

Info File

False

Rest of Read

False

Wildcard File

False

Too Short Reads

False

Too Long Reads

False

Untrimmed Reads

False

Multiple output

False

Job Resource Parameters

Use default job resource parameters

About this Workflow

Author

jen-galaxyproject

Related Workflows

All published workflows
Published workflows by jen-galaxyproject

Rating

Community
(0 ratings, 0.0 average)

Workflow constructed from history 'test cutadapt listpaired'

Author

Related Workflows

Rating

Tags