Identify biological functions for genes in copy number variation regions

Annotation:

StepAnnotation
Step 1: Input dataset
select at runtime
e.g. hg19.RefSeq.bed
Step 2: Input dataset
select at runtime
e.g. GISTIC_CNV_deleted.txt
Step 3: Convert
Whitespaces
Output dataset 'output' from step 2
True
True
Convert the dataset to a tab-delimited file, then change the datatype attribute to an interval file.
Step 4: Intersect
Overlapping Intervals
Output dataset 'output' from step 1
Output dataset 'out_file1' from step 3
1
Identify the overlap between the reference gene annotations and the CNV regions.
Step 5: Cut
c4
Tab
Output dataset 'output' from step 4
Extract the RefSeq gene annotations.
Step 6: Unknown Tool with id 'genomespace_exporter'
Send the list of RefSeq IDs back to GenomeSpace.