Create matched paired end datasets

Annotation: Commonly used after QC steps performed on FASTQ datasets. Takes 4 input files - 2 raw and 2 post-manipulation.

StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Step 3: Input dataset
select at runtime
Step 4: Input dataset
select at runtime
Step 5: FASTQ to Tabular
Output dataset 'output' from step 1
1
Step 6: FASTQ to Tabular
Output dataset 'output' from step 2
1
Step 7: FASTQ to Tabular
Output dataset 'output' from step 3
1
Step 8: FASTQ to Tabular
Output dataset 'output' from step 4
1
Step 9: Add column
1
Output dataset 'output_file' from step 5
YES
Step 10: Add column
1
Output dataset 'output_file' from step 6
YES
Step 11: Join two Datasets
Output dataset 'out_file1' from step 9
1
Output dataset 'output_file' from step 7
1
No
No
No
No

No value found for 'Keep the header lines'. Using default: ''.

Step 12: Join two Datasets
Output dataset 'out_file1' from step 10
1
Output dataset 'output_file' from step 8
1
No
No
No
No

No value found for 'Keep the header lines'. Using default: ''.

Step 13: Compare two Datasets
Output dataset 'out_file1' from step 11
4
Output dataset 'out_file1' from step 12
4
Matching rows of 1st dataset
Step 14: Compare two Datasets
Output dataset 'out_file1' from step 12
4
Output dataset 'out_file1' from step 11
4
Matching rows of 1st dataset
Step 15: Compare two Datasets
Output dataset 'output_file' from step 7
1
Output dataset 'out_file1' from step 13
1
Non Matching rows of 1st dataset
Step 16: Tabular to FASTQ
Output dataset 'out_file1' from step 13
1
2
3
Forward Reads, re-paired
Step 17: Compare two Datasets
Output dataset 'output_file' from step 8
1
Output dataset 'out_file1' from step 14
1
Non Matching rows of 1st dataset
Step 18: Tabular to FASTQ
Output dataset 'out_file1' from step 14
1
2
3
Reverse Reads, re-paired
Step 19: Tabular to FASTQ
Output dataset 'out_file1' from step 15
1
2
3
Forwards reads, post-qc Singletons
Step 20: Tabular to FASTQ
Output dataset 'out_file1' from step 17
1
2
3
Reverse Reads, post-QC Singletons