COVID-19: MCRA


StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Remove beginning
1
Output dataset 'output' from step 1
Step 3: Convert
Commas
Output dataset 'out_file1' from step 2
True
True
Step 4: Cut
c1
Tab
Output dataset 'out_file1' from step 3
Step 5: NCBI Accession Download
File containing Accessions (one per line)
Output dataset 'out_file1' from step 4
Nucleotide
FASTA
Abort with error on first failure
Step 6: NormalizeFasta
Output dataset 'output' from step 5
100
True
Step 7: Text transformation
Output dataset 'outFile' from step 6
s/\..$//
Hide Advanced Options
Step 8: Collapse Collection
Output dataset 'output' from step 7
False
False
Step 9: MAFFT
Output dataset 'output' from step 8
Nucleic acids
fftns
0.123
1.53
do not adjust direction
No matrix
False
False
FASTA
Use default job resource parameters
Step 10: FASTTREE
fasta
Output dataset 'outputAlignment' from step 9
False
No starting trees
False
Nucleotide
GTR+CAT
No