Basic Statistics

Measure	Value
Filename	Chip-seq_Input_DNA
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	161531951
Filtered Sequences	0
Sequence length	36
%GC	40

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per base GC content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

No overrepresented sequences

Kmer Content

Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
GGGGG	17540390	6.708389	13.514825	32
CCCCC	7347310	6.185458	11.234757	32
TTTTT	29390610	3.3054726	5.5298185	8
GGGGC	7251345	3.2473602	5.238316	32
TGGGG	10725810	3.211429	4.5194926	32
GCCCC	4439560	3.1919096	5.0972133	32
CTGGG	8774125	3.0761318	3.794928	32

Files created by FastQC

Chip-seq_Input_DNA_fastqc.zip (168.5 KB)

duplication_levels.png (16.3 KB)

fastqc_data.txt (8.9 KB)

fastqc_report.html (7.3 KB)

kmer_profiles.png (57.6 KB)

per_base_gc_content.png (10.4 KB)

per_base_n_content.png (7.8 KB)

per_base_quality.png (8.2 KB)

per_base_sequence_content.png (22.3 KB)

per_sequence_gc_content.png (30.2 KB)

per_sequence_quality.png (16.4 KB)

rgFastQCzbhLhl.log (1.2 KB)

sequence_length_distribution.png (17.4 KB)

summary.txt (520 B)

FastQC documentation and full attribution is here

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FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://bitbucket.org/rgenetics for details and licensing