chrom	start	end	vcf_id	variant_id	anno_id	ref	alt	qual	filter	type	sub_type	call_rate	in_dbsnp	rs_ids	sv_cipos_start_left	sv_cipos_end_left	sv_cipos_start_right	sv_cipos_end_right	sv_length	sv_is_precise	sv_tool	sv_evidence_type	sv_event_id	sv_mate_id	sv_strand	in_omim	clinvar_sig	clinvar_disease_name	clinvar_dbsource	clinvar_dbsource_id	clinvar_origin	clinvar_dsdb	clinvar_dsdbid	clinvar_disease_acc	clinvar_in_locus_spec_db	clinvar_on_diag_assay	clinvar_causal_allele	clinvar_gene_phenotype	geno2mp_hpo_ct	pfam_domain	cyto_band	rmsk	in_cpg_island	in_segdup	is_conserved	gerp_bp_score	gerp_element_pval	num_hom_ref	num_het	num_hom_alt	num_unknown	aaf	hwe	inbreeding_coeff	pi	recomb_rate	gene	transcript	is_exonic	is_coding	is_splicing	is_lof	exon	codon_change	aa_change	aa_length	biotype	impact	impact_so	impact_severity	polyphen_pred	polyphen_score	sift_pred	sift_score	anc_allele	rms_bq	cigar	depth	strand_bias	rms_map_qual	in_hom_run	num_mapq_zero	num_alleles	num_reads_w_dels	haplotype_score	qual_depth	allele_count	allele_bal	in_hm2	in_hm3	is_somatic	somatic_score	in_esp	aaf_esp_ea	aaf_esp_aa	aaf_esp_all	exome_chip	in_1kg	aaf_1kg_amr	aaf_1kg_eas	aaf_1kg_sas	aaf_1kg_afr	aaf_1kg_eur	aaf_1kg_all	grc	gms_illumina	gms_solid	gms_iontorrent	in_cse	encode_tfbs	encode_dnaseI_cell_count	encode_dnaseI_cell_list	encode_consensus_gm12878	encode_consensus_h1hesc	encode_consensus_helas3	encode_consensus_hepg2	encode_consensus_huvec	encode_consensus_k562	vista_enhancers	cosmic_ids	info	cadd_raw	cadd_scaled	fitcons	in_exac	aaf_exac_all	aaf_adj_exac_all	aaf_adj_exac_afr	aaf_adj_exac_amr	aaf_adj_exac_eas	aaf_adj_exac_fin	aaf_adj_exac_nfe	aaf_adj_exac_oth	aaf_adj_exac_sas	exac_num_het	exac_num_hom_alt	exac_num_chroms	max_aaf_all
chr19	618158	618159	None	4	21	A	G	195.324996948	None	snp	ts	1.0	1	rs11672829	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	None	1	0	0	-0.0414999984205	None	0	0	3	0	1.0	1	None	0	0.584727	POLRMT	ENST00000588649	0	0	0	0	17		c.3423-310T>C	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1X	9	None	None	None	None	6	None	None	None	6	0.0	None	None	None	None	0	-1	-1	-1	0	1	0.4006	0.5863	0.7832	0.7383	0.5119	0.624201	None	None	None	None	0	None	11	8988t;A549;Adult_Th0;Gliobla;Gm12891;HESC;HMEC;Huh75;Myometr;Osteobl;T47d	T	unknown	unknown	T	T	T	None	None	None	-0.1	3.5	0.252514	0	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	0.7832
chr19	619020	619021	None	9	1	G	C	358.570007324	None	snp	tv	1.0	1	rs14155	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	RNA_pol	chr19p13.3	None	1	0	1	-2.69000005722	1.00186e-31	0	1	2	0	0.833333333333	0.72903448947	-0.2	0.333333333333	0.585505	POLRMT	ENST00000588649	1	1	0	0	15	ccC/ccG	p.Pro1081Pro/c.3243C>G	1230	protein_coding	synonymous_variant	synonymous_variant	LOW	None	None	None	None	None	None	1X	16	None	None	None	None	6	None	None	None	5	0.25	None	None	None	None	1	0.490811816702	0.674783796086	0.553032635468	0	1	0.4006	0.5823	0.7822	0.7352	0.5119	0.622404	None	None	None	None	0	None	None	None	T	unknown	unknown	T	T	T	None	COSM148451	None	-0.8	0.68	0.67177	1	0.526	0.543461167304	0.688895655704	0.374353572113	0.595341018252	0.498255813953	0.492231979157	0.555555555556	0.761738327618	27247	16787	111916	0.7822
chr19	619138	619139	None	10	25	G	A	146.940002441	None	snp	ts	1.0	1	rs11669180	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	None	1	0	0	-7.03000020981	None	1	1	1	0	0.5	0.563702861715	0.333333333333	0.6	0.585505	POLRMT	ENST00000588649	0	0	0	0	14		c.3154-29C>T	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1X	14	None	None	None	None	6	None	None	None	3	0.5	None	None	None	None	1	0.0469876715515	0.00908677873694	0.0341538461538	0	1	0.0303	0	0.0102	0.0008	0.0537	0.0171725	None	None	None	None	0	GR_2	6	8988t;Hepatocytes;Mcf7Hypoxlac;Medullo;Osteobl;hTH1	T	unknown	unknown	T	T	T	None	None	None	-0.53	1.59	0.099367	1	0.033	0.0333808246731	0.00747737111373	0.0213801494872	0	0.028602018966	0.0501195878818	0.0461711711712	0.010007322431	3743	120	119320	0.0537
chr19	619407	619408	None	11	25	A	G	218.791000366	None	snp	ts	1.0	1	rs10853989	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	None	1	0	0	1.30999994278	None	0	2	1	0	0.666666666667	0.38647623074	-0.5	0.533333333333	0.585505	POLRMT	ENST00000588649	0	0	0	0	13		c.3067-112T>C	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1X	13	None	None	None	None	6	None	None	None	4	0.285714000463	None	None	None	None	0	-1	-1	-1	0	1	0.2305	0.3313	0.4581	0.438	0.333	0.370607	None	None	None	None	0	None	None	None	T	unknown	T	T	T	T	None	None	None	0.17	4.94	0.069865	0	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	0.4581
chr19	619573	619574	None	12	25	T	G	594.638977051	None	snp	tv	1.0	1	rs10853990	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	None	1	0	0	0.709999978542	None	0	0	3	0	1.0	1	None	0	0.585505	POLRMT	ENST00000588649	0	0	0	0	13		c.3066+12A>C	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1X	18	None	None	None	None	6	None	None	None	6	0.0	None	None	None	None	1	0.48696461825	0.564032697548	0.513080947984	0	1	0.3775	0.5823	0.7802	0.5915	0.504	0.579273	None	None	None	None	0	None	None	None	T	unknown	T	T	T	T	None	None	None	0.05	4.26	0.115753	1	0.515	0.51814833417	0.567434534357	0.351694178975	0.589701770736	0.467252880534	0.477373000797	0.540178571429	0.74799270073	28115	16891	119460	0.7802
chr19	619771	619772	None	13	1	G	C	605.588012695	None	snp	tv	1.0	1	rs11669381	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	None	1	0	1	-2.26999998093	None	0	0	3	0	1.0	1	None	0	0.585505	POLRMT	ENST00000588649	0	0	1	0	12		c.2887C>G	1230	protein_coding	splice_region_variant	splice_region_variant	MED	None	None	None	None	None	None	1X	21	None	None	None	None	6	None	None	None	6	0.0	None	None	None	None	1	0.485071145323	0.558689717925	0.510023130301	0	1	0.3775	0.5823	0.7802	0.5893	0.504	0.578674	None	None	None	None	0	None	4	Ips;Mcf7Hypoxlac;Melano;T47d	T	unknown	T	T	T	T	None	None	None	0.02	4.12	0.252514	1	0.51	0.507415657087	0.568265682657	0.350622043105	0.590639106676	0.467727272727	0.475548087694	0.530150753769	0.756382202772	26254	14892	110442	0.7802
chr19	619912	619913	None	14	26	T	C	312.600006104	None	snp	ts	1.0	1	rs2074548	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	None	1	0	0	-1.66999995708	None	0	2	1	0	0.666666666667	0.38647623074	-0.5	0.533333333333	0.585505	POLRMT	ENST00000588649	0	0	0	0	12		c.2886+45A>G	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1X	20	None	None	None	None	6	None	None	None	4	0.588235020638	None	None	None	None	1	0.175463288764	0.0648994515539	0.137963106495	0	1	0.1354	0.2391	0.1534	0.0658	0.2107	0.15655	None	None	None	None	0	None	None	None	T	unknown	T	T	unknown	T	None	None	None	-0.08	3.6	0.069865	1	0.169	0.191597688903	0.074298293891	0.132882882883	0.270142818647	0.229083665339	0.207189983506	0.234870317003	0.177350711531	15229	1737	97616	0.270142818647
chr19	620806	620807	None	29	24	G	A	48.1334991455	None	snp	ts	1.0	1	rs117097376	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	Low_complexity_Low_complexity_G-rich;trf;trf;trf;trf	1	0	0	0.0	None	1	2	0	0	0.333333333333	0.38647623074	-0.5	0.533333333333	0.585505	POLRMT	ENST00000588649	0	0	0	0	10		c.2640+251C>T	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1X	6	None	None	None	None	6	None	None	None	2	0.600000023842	None	None	None	None	0	-1	-1	-1	0	1	0.1326	0.2371	0.1616	0.0469	0.2127	0.152756	None	None	None	None	0	None	None	None	T	unknown	unknown	unknown	unknown	T	None	None	None	-0.4	2.11	0.067858	0	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	0.2371
chr19	620998	621020	None	31	24	CGCCGGGGGAGGGCGCGGGGGT	C	101.459999084	None	indel	del	1.0	0	None	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	Low_complexity_Low_complexity_G-rich;trf;trf;trf;trf	1	0	0	0.0	None	1	2	0	0	0.333333333333	0.38647623074	-0.5	0.533333333333	0.585505	POLRMT	ENST00000588649	0	0	0	0	10		c.2640+38_2640+58delACCCCCGCGCCCTCCCCCGGC	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	1M21D1M	11	None	None	None	None	6	None	None	None	2	0.600000023842	None	None	None	None	0	-1	-1	-1	0	0	-1	-1	-1	-1	-1	-1	None	None	None	None	0	None	None	None	T	unknown	unknown	unknown	unknown	T	None	None	None	None	None	0.069865	0	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1	-1.0
chr19	621019	621020	None	32	24	T	C	101.459999084	None	snp	ts	1.0	1	rs111437074	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	-1	None	chr19p13.3	Low_complexity_Low_complexity_G-rich;trf;trf;trf;trf	1	0	0	-3.09999990463	None	0	3	0	0	0.5	0.0832645169833	-1	0.6	0.585505	POLRMT	ENST00000588649	0	0	0	0	10		c.2640+38A>G	1230	protein_coding	intron_variant	intron_variant	LOW	None	None	None	None	None	None	21M1X1M	11	None	None	None	None	6	None	None	None	3	0.40000000596	None	None	None	None	1	0.514882506527	0.811540497618	0.612869382759	0	1	0.4035	0.6637	0.8139	0.8714	0.5169	0.682308	None	None	None	None	0	None	None	None	T	unknown	unknown	unknown	unknown	T	None	None	None	0.07	4.38	0.069865	1	0.044	0.220028544244	0.452631578947	0.0372208436725	0.141221374046	0.162790697674	0.0857142857143	0.210526315789	0.537243150685	826	512	8408	0.8714
chr19	621711	621712	None	37	1	A	G	440.347991943	None	snp	ts	1.0	1	rs2238547	None	None	None	None	None	1	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	None	111	None	chr19p13.3	None	1	0	1	3.57999992371	1.0552e-96	0	1	2	0	0.833333333333	0.72903448947	-0.2	0.333333333333	0.585505	POLRMT	ENST00000588649	1	1	0	0	10	gcT/gcC	p.Ala662Ala/c.1986T>C	1230	protein_coding	synonymous_variant	synonymous_variant	LOW	None	None	None	None	None	None	1X	18	None	None	None	None	6	None	None	None	5	0.428570985794	None	None	None	None	0	-1	-1	-1	0	1	0.3905	0.5813	0.7802	0.7398	0.504	0.620008	None	None	None	None	0	None	None	None	T	unknown	T	T	T	T	None	COSM440577	None	-0.38	2.2	0.706548	1	0.516	0.54942411989	0.687228695454	0.387757201646	0.603094123765	0.510170870627	0.496691739797	0.57180156658	0.758719002785	26157	15591	104362	0.7802