StringTie merge

Dataset Information

Number:314
Name:Merged Transcriptome (Mapped paired reads)
Created:Tue Mar 24 07:50:37 2020 (UTC)
Filesize:856.6 KB
Dbkey:Mycobacterium cosmeticum
Format:gtf

Job Information

Galaxy Tool ID:toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie_merge/2.1.1
Galaxy Tool Version:2.1.1
Tool Version:2.1.1
Tool Standard Output:stdout
Tool Standard Error:stderr
Tool Exit Code:0
History Content API ID: bbd44e69cb8906b5a990a5a88cfa108d
Job API ID: bbd44e69cb8906b510e3c6b563741751
History API ID: d77a8b57089c44ad
UUID:3a0739ad-020c-4ab0-b11b-07bfabb7402b

Inheritance Chain

Merged Transcriptome (Mapped paired reads)

Job Dependencies

Dependency Dependency Type Version
stringtie conda 2.1.1
samtools conda 1.9

Dataset peek

# stringtie --merge -p 1 -G /galaxy-repl/main/files/038/603/dataset_38603720.dat -m 50 -c 0 -F 1.0 -T 1.0 -f 0.01 -g 250 -o /galaxy-repl/main/files/038/680/dataset_38680024.dat /galaxy-repl/main/files/038/679/dataset_38679477.dat /galaxy-repl/main/files/03
# StringTie version 2.1.1
NZ_CCBB010000001.1	StringTie	transcript	1	45597	1000	-	.	gene_id "MSTRG.1"; transcript_id "MSTRG.1.1"; 
NZ_CCBB010000001.1	StringTie	exon	1	45597	1000	-	.	gene_id "MSTRG.1"; transcript_id "MSTRG.1.1"; exon_number "1"; 
NZ_CCBB010000001.1	StringTie	transcript	752	3205355	1000	-	.	gene_id "MSTRG.1"; transcript_id "unknown_transcript_1"; ref_gene_id "BN977_RS00015";